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Parallelization of the Banded Needleman & Wunsch Algorithm on UPMEM PiM Architecture for Long DNA Sequence Alignment.

Meven MognolDominique LavenierJulien Legriel
Published in: ICPP (2024)
Keyphrases
  • sequence alignment
  • learning algorithm
  • dynamic programming
  • hardware implementation
  • optimal solution
  • worst case
  • memory efficient
  • gpu accelerated
  • k means
  • parallel implementation
  • binding sites
  • long sequences