Accelerating All-to-All Protein Structures Comparison with TMalign Using a NoC Many-Cores Processor Architecture.
Anuj SharmaAntonis PapanikolaouElias S. ManolakosPublished in: IPDPS Workshops (2013)
Keyphrases
- protein structure
- multi processor
- multi core processors
- level parallelism
- protein sequences
- network on chip
- single processor
- molecular biology
- shared memory
- program execution
- protein structure and function
- secondary structure
- parallel programming
- instruction set
- parallel architectures
- high speed
- processor core
- protein structure prediction
- computational approaches
- amino acids
- general purpose processors
- protein tertiary structure
- central processing unit
- amino acid sequences
- experimentally determined
- nuclear magnetic resonance
- distributed memory
- graph databases
- routing algorithm