Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: A Race Between FPGA and GPU.
Licheng GuoJason LauZhenyuan RuanPeng WeiJason CongPublished in: FCCM (2019)
Keyphrases
- pairwise
- parallel hardware
- field programmable gate array
- real time
- hardware implementation
- hardware architecture
- parallel computing
- low cost
- computational methods
- high speed
- graphics processing units
- genome sequencing
- embedded systems
- massively parallel
- drug design
- high throughput
- belief propagation
- similarity measure
- computing systems
- statistical significance
- data acquisition
- gene expression analysis
- data mining