DeepProSite: structure-aware protein binding site prediction using ESMFold and pretrained language model.
Yitian FangYi JiangLeyi WeiQin MaZhixiang RenQianmu YuanDong-Qing WeiPublished in: Bioinform. (2023)
Keyphrases
- language model
- contact map
- language modeling
- protein interaction
- binding sites
- speech recognition
- probabilistic model
- n gram
- test collection
- document retrieval
- query expansion
- virtual screening
- information retrieval
- dependency structure
- protein protein
- context sensitive
- protein structure
- retrieval model
- protein structure prediction
- predicting protein
- query terms
- mixture model
- average precision
- dna binding
- protein protein interactions
- translation model
- similarity measure
- drug design
- sequence data
- protein sequences