WOODSTOCC: Extracting Latent Parallelism from a DNA Sequence Aligner on a GPU.
Stephen V. ColeJacob R. GardnerJeremy D. BuhlerPublished in: ISPDC (2014)
Keyphrases
- dna sequences
- parallel computation
- parallel computing
- parallel processing
- dna computing
- tandem repeats
- dna sequencing
- motif discovery
- gene structure prediction
- latent variables
- shared memory
- sequence patterns
- human genome
- massively parallel
- coding regions
- real time
- problems in computational biology
- biological sequences
- parallel implementation
- parallel algorithm
- commodity hardware
- gene prediction
- parallel architectures
- parallel programming
- graphics processing units
- memory bandwidth
- general purpose
- databases