Lokatt: a hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network.
Xuechun XuNayanika BhallaPatrik StahlJoakim JaldénPublished in: BMC Bioinform. (2023)
Keyphrases
- hidden markov models
- hidden semi markov models
- speech recognition
- variable duration
- sequential data
- conditional random fields
- gesture recognition
- markov models
- viterbi algorithm
- handwritten word recognition
- forward backward
- automatic speech recognition
- discriminative training
- hidden state
- markov model
- hidden states
- network structure
- kernel density
- markov random field
- hierarchical hidden markov model
- neural network
- dna sequences
- noise reduction
- steady state
- continuous hidden markov models