Protein structure prediction using a combination of sequence homology and global energy minimization: II. Energy functions.
Michael J. DudekK. RamnarayanJay W. PonderPublished in: J. Comput. Chem. (1998)
Keyphrases
- energy minimization
- energy function
- protein structure prediction
- sequence alignment
- graph cuts
- amino acid sequences
- sequence analysis
- markov random field
- protein sequences
- computational biology
- global minimum
- problems in computer vision
- belief propagation
- image segmentation
- protein structure
- amino acids
- protein folding
- pairwise
- regularization term
- max flow
- active contours
- loopy belief propagation
- min cut
- graph theory
- coarse grained
- maximum a posteriori
- level set
- hidden markov models
- energy minimization problems
- smoothness constraint
- energy functional