Parallel verlet neighbor list algorithm for GPU-optimized MD simulations.
Tyson J. LipscombAnqi ZouSamuel S. ChoPublished in: BCB (2012)
Keyphrases
- parallel implementation
- parallel computation
- times faster
- detection algorithm
- high accuracy
- optimal solution
- computational complexity
- experimental evaluation
- k means
- matching algorithm
- worst case
- optimization algorithm
- objective function
- parallel computing
- recognition algorithm
- segmentation algorithm
- dynamic programming
- np hard
- cost function
- probabilistic model
- improved algorithm
- significant improvement
- preprocessing
- graphics processing units
- similarity measure
- parallel version