Partial profile alignment kernels for protein classification.
Thanh T. NgoRui KuangPublished in: GENSiPS (2009)
Keyphrases
- protein classification
- protein sequences
- sequence alignment
- psi blast
- remote homology detection
- string kernels
- kernel methods
- grammatical inference
- multi class
- computational biology
- relation extraction
- information extraction
- amino acid sequences
- dynamic programming
- secondary structure
- suffix tree
- protein structure
- statistically significant
- kernel function
- support vector machine