A 3D pattern matching algorithm for DNA sequences.
Joan HérissonGuillaume PayenRachid GherbiPublished in: Bioinform. (2007)
Keyphrases
- dna sequences
- pattern matching algorithm
- pattern matching
- matching algorithm
- aho corasick
- string matching
- compression algorithm
- tandem repeats
- human genome
- dna computing
- coding regions
- sequence patterns
- binding sites
- regular expressions
- tree patterns
- transcription factor binding sites
- databases
- suffix tree
- co occurrence