An MCMC algorithm for base calling in sequencing-by-synthesis.
Ting WuHaris VikaloManohar ShamaiahPublished in: ACSCC (2011)
Keyphrases
- learning algorithm
- experimental evaluation
- k means
- monte carlo
- matching algorithm
- significant improvement
- optimization algorithm
- detection algorithm
- np hard
- cost function
- times faster
- computational complexity
- decision trees
- convergence rate
- recognition algorithm
- improved algorithm
- parameter estimation
- segmentation algorithm
- theoretical analysis
- probabilistic model
- preprocessing
- objective function
- particle swarm optimization
- input data
- ant colony optimization
- tree structure
- computational cost
- kalman filter
- belief propagation
- search space
- data structure
- sampling algorithm