Cache-Oblivious Dynamic Programming for Bioinformatics.
Rezaul Alam ChowdhuryHai-Son LeVijaya RamachandranPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2010)
Keyphrases
- dynamic programming
- machine learning
- data mining
- text mining
- stereo matching
- life sciences
- greedy algorithm
- prefetching
- data analysis
- hit rate
- query processing
- cache management
- computational biology
- back end
- optimal policy
- linear programming
- state space
- single machine
- data access
- coarse to fine
- computational tools
- cache replacement
- multithreading
- embedded processors
- dynamic programming algorithms
- memory subsystem
- semantic caching
- memory hierarchy
- drug design
- computational intelligence
- replacement policy
- molecular biology