Sigma: multiple alignment of weakly-conserved non-coding DNA sequence.
Rahul SiddharthanPublished in: BMC Bioinform. (2006)
Keyphrases
- dna sequences
- multiple alignment
- coding regions
- sequence alignment
- binding sites
- rna sequences
- nucleotide sequences
- gene prediction
- gene structure prediction
- secondary structure
- protein coding regions
- protein sequences
- multiple sequence alignment
- human genome
- biological sequences
- transcription factor binding sites
- protein families
- sequential pattern mining
- transcription factors
- motif discovery
- dna computing
- computational methods
- regulatory elements
- graph theoretic
- protein structure
- mining sequential patterns
- dynamic programming
- genomic sequences
- machine learning
- computational biology
- pairwise
- sequence databases
- scoring function
- multi dimensional
- data mining