An alignment-free approach to cluster proteins using frequency of conserved k-mers.
Armen AbnousiShira L. BroschatAnanth KalyanaramanPublished in: BCB (2015)
Keyphrases
- sequence alignment
- protein sequences
- amino acids
- sequence similarity
- protein structure alignment
- multiple sequence alignment
- rna sequences
- protein structure
- multiple sequence alignments
- secondary structure
- protein function
- protein complexes
- amino acid sequences
- phylogenetic analysis
- clustering algorithm
- structural motifs
- protein protein interactions
- protein families
- image alignment
- data clustering
- cluster analysis
- protein structure prediction
- pairwise
- ppi networks
- sequence databases
- computational methods
- functional modules
- genomic data
- protein folding
- computational biology
- subcellular localization
- biological entities
- high throughput