Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction.
Yi-Heng ZhuChengxin ZhangDong-Jun YuYang ZhangPublished in: PLoS Comput. Biol. (2022)
Keyphrases
- language model
- gene ontology
- protein interaction
- protein protein interactions
- protein function
- protein function prediction
- protein interaction data
- language modeling
- n gram
- microarray
- probabilistic model
- functional modules
- gene products
- information theoretic
- computational methods
- information retrieval
- semantic similarity
- protein structure prediction
- unsupervised learning
- gene expression
- smoothing methods
- protein sequences
- protein complexes
- biological data
- supervised learning
- high throughput
- bayesian networks
- systems biology
- network analysis
- high precision
- biomedical literature
- protein interaction networks
- network topology
- structural properties
- gene expression data
- em algorithm