A Customized Processing-in-Memory Architecture for Biological Sequence Alignment.
Nasrin AkbariMehdi ModarressiMasoud DaneshtalabMohammad LoniPublished in: ASAP (2018)
Keyphrases
- sequence alignment
- processing elements
- real time
- memory management
- comparative genomics
- pairwise
- parallel architecture
- phylogenetic analysis
- binding sites
- computational power
- random access
- multiple sequence alignment
- hardware implementation
- molecular biology
- hardware architecture
- protein structure prediction
- biological systems
- gpu accelerated
- memory access
- dynamic programming
- main memory
- memory requirements
- memory efficient
- processing units
- associative memory
- protein sequences
- multiple alignment
- biological data
- learning algorithm
- genetic algorithm