Phylogenetic Manifold Regularization: A semi-supervised approach to predict transcription factor binding sites.
Faizy AhsanAlexandre DrouinFrançois LavioletteDoina PrecupMathieu BlanchettePublished in: BIBM (2020)
Keyphrases
- manifold regularization
- semi supervised
- semi supervised learning
- transcription factor binding sites
- semi supervised classification
- dimension reduction
- binding sites
- unlabeled data
- labeled data
- matrix completion
- dna sequences
- pairwise
- genome sequences
- active learning
- supervised learning
- unsupervised learning
- labeled and unlabeled data
- transcription factors
- nonnegative matrix factorization
- low rank
- text classification
- machine learning
- loss function
- document collections