Fast similarity search for protein 3d structures using topological pattern matching based on spatial relations.
Sung-Hee ParkKeun Ho RyuDavid R. GilbertPublished in: Int. J. Neural Syst. (2005)
Keyphrases
- pattern matching
- spatial relations
- topological relations
- spatial reasoning
- directional relations
- spatial information
- spatial objects
- string matching
- closely related
- spatial relationships
- regular expressions
- matching process
- pattern matching algorithm
- spatial knowledge
- protein structure
- machine learning
- protein sequences
- visual words
- co occurrence
- amino acids
- boyer moore
- spatial configuration
- structural features
- image processing