OntoProtein: Protein Pretraining With Gene Ontology Embedding.
Ningyu ZhangZhen BiXiaozhuan LiangSiyuan ChengHaosen HongShumin DengQiang ZhangJiazhang LianHuajun ChenPublished in: ICLR (2022)
Keyphrases
- gene ontology
- protein function
- protein protein interactions
- protein interaction data
- protein interaction
- microarray
- gene products
- semantic similarity
- information theoretic
- protein function prediction
- signaling pathways
- computational methods
- genomic data
- high throughput
- biological processes
- gene function
- functional modules
- interaction networks
- microarray expression data
- gene expression data
- saccharomyces cerevisiae
- gene expression
- protein sequences
- biological data
- gene sets
- structural properties
- network analysis
- biological networks
- biomedical literature
- protein complexes
- high precision
- gene networks
- protein protein interaction networks
- protein interaction networks
- biological knowledge
- protein structure
- regulatory networks
- co occurrence
- microarray data