CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway construction.
Gianfranco PolitanoFrancesca OrsoMonica RaimoAlfredo BensoAlessandro SavinoDaniela TavernaStefano Di CarloPublished in: BMC Bioinform. (2016)
Keyphrases
- regulatory networks
- signal transduction
- biological systems
- protein protein interactions
- gene regulation
- gene expression
- systems biology
- biologically inspired
- complex systems
- biological processes
- transcription factors
- gene ontology
- transcriptional regulatory
- microarray
- gene regulatory networks
- cellular processes
- mathematical modeling
- highly complex
- high throughput
- biological networks
- biological data
- gene expression data
- signaling pathways
- biomedical literature
- computational models
- biological information
- network topology
- protein interaction
- genomic data
- high precision
- biological knowledge
- expression profiles
- microarray data
- computational methods