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A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms.

Bastiaan Van der RoestMartin C. J. BootsmaEgil A. J. FischerDon KlinkenbergMirjam E. Kretzschmar
Published in: PLoS Comput. Biol. (2023)
Keyphrases
  • bayesian inference
  • probabilistic model
  • prior information
  • dynamic programming
  • tree structure
  • hyperparameters
  • pairwise
  • k means
  • prior knowledge
  • least squares
  • parameter estimation