GPU-Based PostgreSQL Extensions for Scalable High-Throughput Pattern Matching.
Grant J. ScottMatthew R. EnglandKevin MelkowskiZachary FieldsDerek T. AndersonPublished in: ICPR (2014)
Keyphrases
- pattern matching
- high throughput
- microarray
- low latency
- genome wide
- biological data
- systems biology
- database management systems
- pattern matching algorithm
- regular expressions
- data acquisition
- genomic data
- mass spectrometry
- string matching
- protein protein interactions
- bit parallel
- mass spectrometry data
- approximate pattern matching
- databases
- boyer moore
- data management
- gene expression data
- query optimization
- relational databases
- image processing