Advantages and GPU implementation of high-performance indexed DNA search based on suffix arrays.

Gustavo Encarnação Nuno Sebastião Nuno Roma

Published in: HPCS (2011)

Keyphrases

suffix array
gpu implementation
inverted file
space efficient
information retrieval systems
real time
text retrieval
graphics processing units
data compression
user queries
inverted index
suffix tree
pattern matching
indexing method
data structure
multiscale
search engine
information retrieval