Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments.
Xin WangGuohua WangChangyu ShenLang LiXinguo WangSean MooneyHoward J. EdenbergJeremy SanfordYunlong LiuPublished in: BIOCOMP (2007)
Keyphrases
- genome wide
- rna sequences
- rna secondary structures
- transcription factor binding sites
- structural motifs
- cis regulatory
- protein sequences
- nucleotide sequences
- dna binding
- rna molecules
- secondary structure
- genomic sequences
- genome sequences
- high throughput
- sequence data
- rna secondary structure prediction
- sequence analysis
- molecular biology
- detection algorithm
- rna structures
- human genome
- object detection
- protein folding
- region detection
- multiple alignment
- computational biology
- string kernels
- transcription factors
- protein protein interactions
- amino acids
- protein structure
- dna sequences
- protein structure prediction
- motif finding
- image regions