TF-Cluster: A pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).
Jeff NieRon M. StewartHang ZhangJames A. ThomsonFang RuanXiaoqi CuiHairong WeiPublished in: BMC Syst. Biol. (2011)
Keyphrases
- transcription factors
- binding sites
- microarray
- gene expression
- regulatory networks
- component analysis
- dna sequences
- co occurrence
- genome wide
- computational biology
- network model
- dna binding
- network structure
- clustering algorithm
- sequence data
- gene expression data
- link prediction
- text mining
- biomedical literature
- wireless sensor networks
- data analysis
- gene networks
- information retrieval