Pairwise sequence alignment for very long sequences on GPUs.
Junjie LiSanjay RankaSartaj SahniPublished in: ICCABS (2012)
Keyphrases
- sequence alignment
- long sequences
- pairwise
- data streams
- dynamic programming
- general purpose
- gpu accelerated
- similarity measure
- mining sequential patterns
- multiple sequence alignment
- genetic algorithm
- phylogenetic analysis
- graphics processing units
- parallel processing
- markov random field
- statistical significance
- amino acids
- multiple alignment
- comparative genomics
- real time