A Comparative Analysis of Transformer-based Protein Language Models for Remote Homology Prediction.
Anowarul KabirAsher MoldwinAmarda ShehuPublished in: BCB (2023)
Keyphrases
- language model
- language modeling
- subcellular localization
- probabilistic model
- contact map
- n gram
- document retrieval
- retrieval model
- speech recognition
- language modelling
- amino acid sequences
- query expansion
- protein sequences
- prediction accuracy
- sequence analysis
- statistical language models
- vector space model
- test collection
- sequence alignment
- protein structure prediction
- information retrieval
- context sensitive
- document ranking
- language models for information retrieval
- smoothing methods
- protein interaction
- relevance model
- protein structure
- retrieval effectiveness
- query specific
- term dependencies
- pseudo relevance feedback
- ad hoc information retrieval
- okapi bm
- secondary structure
- protein function
- passage retrieval
- protein protein interactions
- amino acids
- keywords