Guiding belief propagation using domain knowledge for protein-structure determination.
Ameet SoniCraig A. BingmanJude W. ShavlikPublished in: BCB (2010)
Keyphrases
- belief propagation
- protein structure
- domain knowledge
- nuclear magnetic resonance
- graphical models
- message passing
- graph cuts
- stereo matching
- markov random field
- approximate inference
- protein sequences
- markov networks
- fixed point
- secondary structure
- pairwise
- protein structure prediction
- loopy belief propagation
- factor graphs
- protein tertiary structure
- energy minimization
- amino acids
- background knowledge
- free energy
- amino acid sequences
- max product
- prior knowledge
- protein structure alignment
- experimentally determined
- training data
- probability distribution
- energy function
- probabilistic inference
- generalized belief propagation
- protein structural
- computer vision
- probabilistic model
- upper bound
- conditional random fields
- image denoising