Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Sushil TripathiKaren R. ChristieRama BalakrishnanRachael P. HuntleyDavid P. HillLiv ThommesenJudith A. BlakeMartin KuiperAstrid LægreidPublished in: Database J. Biol. Databases Curation (2013)
Keyphrases
- transcription factors
- microarray
- gene ontology
- dna binding
- gene expression
- protein interaction
- high throughput
- transcription factor binding sites
- binding sites
- genome wide
- gene sets
- gene regulation
- gene expression data
- microarray data
- biological processes
- regulatory networks
- cell cycle
- protein protein interactions
- high dimensionality
- component analysis
- dna sequences
- saccharomyces cerevisiae
- signaling pathways
- systems biology
- molecular biology
- sequence similarity
- motif discovery
- computational biology
- protein families
- semantic similarity
- data mining
- protein function
- co occurrence