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QCKer: An x86-AVX/AVX2 Implementation of Q-gram Counting Filter for DNA Sequence Alignment.

Joven L. PernezRoger Luis UyKaizen Vinz A. BorjaJan Carlo G. Maghirang
Published in: ICBRA (2019)
Keyphrases
  • sequence alignment
  • binding sites
  • pairwise
  • gpu accelerated
  • dna computing
  • dynamic programming
  • multiple sequence alignment
  • machine learning
  • dna sequences
  • sequence databases
  • comparative genomics