Efficacy of independence sampling in replica exchange simulations of ordered and disordered proteins.
Kuo-Hao LeeJianhan ChenPublished in: J. Comput. Chem. (2017)
Keyphrases
- protein sequences
- amino acids
- computational methods
- random sampling
- protein structure
- protein protein interactions
- protein structure prediction
- peer to peer
- sample size
- conditional independence
- monte carlo
- information exchange
- simulation model
- partially ordered
- data sets
- sampling algorithm
- sampling methods
- protein function
- functional modules
- amino acid sequences
- numerical simulations
- load balancing
- probability distribution
- gel electrophoresis
- molecular dynamics simulations
- protein complexes
- sampling strategy
- protein interaction networks
- biological processes
- fault tolerance
- gene expression
- bayesian networks