High-Throughput Pattern Matching With CMOL FPGA Circuits: Case for Logic-in-Memory Computing.
Advait MadhavanTim SherwoodDmitri B. StrukovPublished in: IEEE Trans. Very Large Scale Integr. Syst. (2018)
Keyphrases
- pattern matching
- high throughput
- microarray
- genome wide
- data acquisition
- biological data
- high speed
- systems biology
- pattern matching algorithm
- matching process
- string matching
- random access memory
- regular expressions
- protein protein interactions
- real time
- genomic data
- dna sequencing
- hardware implementation
- mass spectrometry data
- proteomic data
- gene expression data
- database
- boyer moore
- field programmable gate array
- mass spectrometry
- low cost
- bit parallel
- approximate pattern matching