Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference.
Srinath SridharFumei LamGuy E. BlellochR. RaviRussell SchwartzPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2008)
Keyphrases
- maximum parsimony
- mixed integer linear programming
- phylogenetic trees
- maximum likelihood
- branch and bound algorithm
- tabu search
- cutting plane
- mathematical programming
- computational biology
- production planning
- mixed integer nonlinear programming
- mixed integer
- tree structures
- probabilistic inference
- branch and bound
- combinatorial optimization
- simulated annealing
- neural network
- graphical representation
- approximate solutions
- state space