Masking patterns in sequences: A new class of motif discovery with don't cares.
Giovanni BattagliaDavide CangelosiRoberto GrossiNadia PisantiPublished in: Theor. Comput. Sci. (2009)
Keyphrases
- recurring patterns
- motif discovery
- pattern discovery
- biological sequences
- sequential patterns
- dna sequences
- transcription factor binding sites
- sequence analysis
- motif finding
- binding sites
- data mining tasks
- protein sequences
- interesting patterns
- sequential pattern mining
- computational biology
- multi dimensional
- sequence databases
- multiple alignment
- sequence data
- multiobjective optimization
- machine learning
- gene expression
- similarity search
- genetic algorithm