An Efficient Parallel Sketch-based Algorithm for Mapping Long Reads to Contigs.
Tazin RahmanOieswarya BhowmikAnanth KalyanaramanPublished in: IPDPS Workshops (2023)
Keyphrases
- times faster
- parallel implementation
- detection algorithm
- computationally efficient
- search space
- np hard
- dynamic programming
- neural network
- learning algorithm
- highly efficient
- optimal solution
- significant improvement
- high accuracy
- computational cost
- optimization algorithm
- probabilistic model
- experimental evaluation
- cost function
- objective function
- data sets
- expectation maximization
- k means
- computational complexity
- matching algorithm
- path planning
- data structure
- convex hull
- improved algorithm
- decision trees
- memory efficient