Helixer: cross-species gene annotation of large eukaryotic genomes using deep learning.
Felix StiehlerMarvin SteinbornStephan ScholzDaniela DeyAndreas P. M. WeberAlisandra K. DentonPublished in: Bioinform. (2021)
Keyphrases
- deep learning
- genomic sequences
- dna sequences
- sequenced genomes
- binding sites
- comparative genomics
- horizontal gene transfer
- evolutionary history
- gene function
- genome sequencing
- unsupervised feature learning
- unsupervised learning
- transcription factor binding sites
- genome sequences
- human genome
- machine learning
- active learning
- image annotation
- mental models
- weakly supervised
- higher order
- biological processes
- phylogenetic trees
- transcription factors
- gene ontology
- gene expression
- metabolic pathways
- gene clusters
- genome wide
- high throughput
- supervised learning
- genome annotation
- training data