NvWa: Enhancing Sequence Alignment Accelerator Throughput via Hardware Scheduling.
Yewen LiXueqi LiRuihao GaoWanqi LiuGuangming TanPublished in: HPCA (2023)
Keyphrases
- sequence alignment
- field programmable gate array
- resource utilization
- pairwise
- low cost
- response time
- low latency
- scheduling problem
- scheduling algorithm
- real time
- scheduling policies
- dynamic programming
- parallel processors
- resource allocation
- amino acids
- protein sequences
- gpu accelerated
- binding sites
- computer systems
- hardware implementation
- parallel implementation
- parallel machines
- multiple alignment
- phylogenetic analysis
- multiple sequence alignment
- massively parallel
- computing systems
- embedded systems
- data acquisition
- compute intensive
- comparative genomics
- data sets