HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank.
Lizhi LiuXiaodi HuangHiroshi MamitsukaShanfeng ZhuPublished in: Bioinform. (2020)
Keyphrases
- learning to rank
- protein interaction
- ranking functions
- loss function
- information retrieval
- gene expression
- prediction accuracy
- contact map
- document retrieval
- direct optimization
- ranking svm
- collaborative filtering
- evaluation measures
- relevance judgments
- query dependent
- supervised learning
- balancing exploration and exploitation
- retrieval systems
- amino acids
- protein protein interactions
- learning to rank algorithms
- protein structure
- ordinal regression
- information retrieval systems
- association rules