A Monte Carlo EM Algorithm for De Novo Motif Discovery in Biomolecular Sequences.
Chengpeng BiPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2009)
Keyphrases
- monte carlo
- em algorithm
- motif discovery
- biological sequences
- motif finding
- expectation maximization
- dna sequences
- maximum likelihood
- molecular biology
- binding sites
- data mining tasks
- parameter estimation
- markov chain
- sequence data
- maximum likelihood estimation
- generative model
- sequence databases
- multiple sequence alignment
- computational biology
- pattern discovery
- multiobjective optimization
- protein sequences
- probabilistic model
- particle filter
- sequence alignment
- biological data
- density estimation
- data mining
- sequential patterns
- knowledge discovery
- data mining algorithms
- biological networks
- state space
- unsupervised learning
- search space