Inferring Binding Energies from Selected Binding Sites.

Yue Zhao David Granas Gary D. Stormo

Published in: PLoS Comput. Biol. (2009)

Keyphrases

binding sites
dna binding
transcription factor binding sites
transcription factors
dna sequences
gene expression

sequence data
motif discovery
regulatory elements
cis regulatory
statistical significance
genome wide

graph cuts
protein interaction
biological sequences
transcriptional regulation
data mining

coding regions
gene regulation
markov random field
similarity measure
information retrieval