KmerEstimate: A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage.
Sairam BeheraSutanu GayenJitender S. DeogunN. V. VinodchandranPublished in: BCB (2018)
Keyphrases
- dynamic programming
- optimal solution
- detection algorithm
- worst case
- learning algorithm
- optimization algorithm
- np hard
- computational cost
- experimental evaluation
- clustering method
- high accuracy
- exhaustive search
- search space
- times faster
- globally optimal
- closed form
- matching algorithm
- optimal parameters
- locally optimal
- input data
- recognition algorithm
- solution space
- optimal strategy
- tree structure
- theoretical analysis
- particle swarm optimization
- linear programming
- probabilistic model
- cost function
- k means
- high dimensional
- search algorithm
- data structure
- bayesian networks