Detecting overlapping coding sequences with pairwise alignments.
Andrew E. FirthChris M. BrownPublished in: Bioinform. (2005)
Keyphrases
- pairwise
- sequence alignment
- global alignment
- multi class
- higher order
- multiple sequence alignments
- multiple sequence alignment
- loss function
- multiple alignment
- coding scheme
- similarity measure
- markov random field
- semi supervised
- high order
- protein sequences
- coding method
- sequential patterns
- belief propagation
- point sets
- spectral clustering
- pairwise constraints
- motion estimation
- dynamic programming
- hidden markov models
- neural network