ProteinWorldDB: querying radical pairwise alignments among protein sets from complete genomes.
Thomas D. OttoMarcos CatanhoCristian TristãoMárcia BezerraRenan Mathias FernandesGuilherme Steinberger EliasAlexandre Capeletto ScagliaBill BovermannViktors BerstisSérgio LifschitzAntonio Basílio de MirandaWim M. DegravePublished in: Bioinform. (2010)
Keyphrases
- sequence alignment
- pairwise
- phylogenetic analysis
- comparative genomics
- sequence analysis
- multiple alignment
- protein sequences
- query language
- multi class
- similarity measure
- multiple sequence alignment
- sequence data
- multiple sequence alignments
- amino acids
- databases
- global alignment
- genomic sequences
- semi supervised
- higher order
- protein structure prediction
- sequence databases
- database
- protein structure
- protein function
- binding sites
- graph databases
- protein folding
- markov random field
- graph matching
- genome sequences
- dynamic programming
- pairwise interactions
- query processing
- sequential patterns