Generic accelerated sequence alignment in SeqAn using vectorization and multi-threading.
René RahnStefan BudachPascal CostanzaMarcel EhrhardtJonny HancoxKnut ReinertPublished in: Bioinform. (2018)
Keyphrases
- sequence alignment
- multithreading
- pairwise
- multi threaded
- computational power
- parallel computing
- dynamic programming
- gpu accelerated
- protein sequences
- highly efficient
- binding sites
- phylogenetic analysis
- comparative genomics
- multiple sequence alignment
- amino acids
- data partitioning
- coarse grained
- multiple alignment
- natural language processing
- markov random field
- high level
- learning styles
- protein structure