Protein-specific prediction of mRNA binding using RNA sequences, binding motifs and predicted secondary structures.
Carmen Maria LiviEnrico BlanzieriPublished in: BMC Bioinform. (2014)
Keyphrases
- rna sequences
- secondary structure
- solvent accessibility
- predicting protein
- protein secondary structure
- rna secondary structure prediction
- protein sequences
- experimentally determined
- tertiary structure
- dna sequences
- transcription factor binding sites
- amino acids
- protein structure
- rna secondary structures
- amino acid sequences
- protein structure prediction
- protein folding
- protein data bank
- computational methods
- structural features
- remote homology detection
- rna molecules
- computational biology
- psi blast
- genome sequences
- machine learning
- protein function
- biological sequences
- structural motifs
- protein classification
- contact map
- molecular biology
- statistical analysis
- upper bound