InParanoid-DIAMOND: faster orthology analysis with the InParanoid algorithm.
Emma PerssonErik L. L. SonnhammerPublished in: Bioinform. (2022)
Keyphrases
- experimental evaluation
- experimental study
- dynamic programming
- detection algorithm
- learning algorithm
- computational complexity
- objective function
- particle swarm optimization
- tree structure
- k means
- machine learning
- theoretical analysis
- simulated annealing
- probabilistic model
- computational cost
- times faster
- improved algorithm
- data analysis
- similarity measure
- matching algorithm
- convergence rate
- ant colony optimization
- data mining
- estimation algorithm
- optimization algorithm
- segmentation algorithm
- expectation maximization
- input data
- worst case
- np hard
- search space
- artificial neural networks
- preprocessing
- optimal solution