Gigabyte-scale alignment of biological sequences: A case study of IO bandwidth reconfiguration for FPGA acceleration.
Theepan MoorthyJan Mendonca CorreaSathish GopalakrishnanPublished in: CCECE (2013)
Keyphrases
- biological sequences
- multiple sequence alignment
- protein sequences
- sequence data
- molecular biology
- smith waterman
- computational biology
- dna sequences
- biological data
- high speed
- motif finding
- low cost
- binding sites
- real time
- sequence alignment
- self organizing maps
- protein structure
- data sets
- knn
- data model
- information retrieval
- longest common subsequence