Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICs.
Joël LindeggerDamla Senol CaliMohammed AlserJuan Gómez-LunaNika Mansouri-GhiasiOnur MutluPublished in: Bioinform. (2023)
Keyphrases
- genomic sequences
- memory bandwidth
- single instruction multiple data
- parallel processing
- graphics processing units
- computational power
- dna sequences
- level parallelism
- graphics processors
- general purpose
- multi core systems
- commodity hardware
- parallel programming
- processing power
- memory access
- real time
- memory requirements
- floating point
- main memory
- processing units
- shared memory
- gene prediction
- computing power
- machine learning
- physical design
- embedded systems
- signal processing
- compute intensive
- databases