Integrating Long-Range Regulatory Interactions to Predict Gene Expression Using Graph Convolutional Networks.
Jeremy BignessXavier LoinazShalin PatelErica LarschanRitambhara SinghPublished in: J. Comput. Biol. (2022)
Keyphrases
- long range
- gene expression
- long range interactions
- protein interaction
- gene regulation
- biological networks
- microarray
- short range
- protein interaction networks
- transcription factors
- gene expression data
- post transcriptional
- dna binding
- biological processes
- functional modules
- regulatory elements
- gene expression patterns
- conditional random fields
- regulatory networks
- microarray data
- interaction networks
- gene regulatory networks
- binding sites
- signaling pathways
- gene networks
- gene expression profiles
- biological knowledge
- dna microarray
- transcriptional regulation
- biological systems
- high throughput
- network structure
- protein function
- small world
- protein protein interaction networks
- graph mining
- gene selection
- dna sequences
- genome wide
- complex networks
- hidden markov models
- similarity measure