Automat and BLAST: comparison of two protein sequence similarity search programs.
Hubert CantalloubeGilles LabesseJacques ChomilierCarole E. NahumY. Y. ChoV. ChamsA. AchourA. LachgarJ. P. MbikaW. IssingPublished in: Comput. Appl. Biosci. (1995)
Keyphrases
- similarity search
- protein sequences
- numerical simulations
- sequence alignment
- distance function
- high dimensional
- metric space
- similarity measure
- sequence databases
- protein structure
- similarity searching
- query processing
- similarity queries
- high dimensional data
- computational biology
- knn
- r tree
- biological sequences
- amino acids
- secondary structure
- hash functions
- indexing techniques
- locality sensitive hashing
- mass spectra
- efficient similarity search
- metric access methods
- theoretical analysis
- pattern recognition
- structural motifs
- cross view
- database systems
- moving objects
- searching in metric spaces